Would be interesting to see a few comments from Ad Hoc on this, hope he chimes in!
Just noticed this thread
Yup. But I have come across yacht designers that do this - have more than 50% cutout as noted. It is ostensibly a throwback to the days when such yacht structures were never surveyed in detail. The yacht designer didn’t know better or simply subcontracted out the structural side to the yard to sort out. Yards always make it easier for themselves!! This is next to impossible to do these days with Class and now ISO to cover the left overs, as rightly pointed out that Class does not accept cutouts which are greater than 50% of the web depth.
Welding the flange of the long.t Tee directly the web of the transverse is never a good idea, unless there is significant strength reinforcement…i.e the stress in the member is low that one can get away with such, usually owing to much thicker scantlings. But considering more than 50% of the frame has already been taken away..that option has long bolted!
In the joint itself there is a biaxial stress raiser at the welded connection, here is a typical detail, taken from Proboat Magazine article showing this.

As for primary etc structures. Primary supports secondary and secondary supports tertiary. The tertiary in this case, is the plating.
As a general note, there does appear to be a lot wrong with what is shown. But It is hard to say 100% because it may be just that the other structure as yet to be added. But having breaks where they are does not help and it also appears the sequencing of ******** & fabrication is also not ideal either!