Obviously if you've sprung a few battens before, you'd realize the correlations in 3D. The problem as I see it, is you don't understand the problem fully, so can't address it on a computer screen. It's one thing to have the physical skills to manipulate lines on a screen and wholly another to understand why you need to do so. For example a wide bowed boat would experience a much more dramatic flat spot on the sheer, compaired to a flatter sheer on a fine entried boat. Typically this is called "expansion" or "projection" and it's performed in a number of locations around a yacht, though the sheer and transoms are most common places to need to address this issue.
I'm not trying to insult you, but some education is necessary, before you draw anything is the usual cure. Chapelle's "Yacht Design & Planning" is a common reference (around page 350 I think). There are other texts that cover it (Greg Rossel's book "Building Small Boats" is one), as well as practical experence that reinforces it. Simply making this correction on the loft floor is the fastest way to understand what's going on and subsequent drawings on the screen will look right once built.